The following tutorials are highly recommended for new users:
1. Getting started An introduction to the ImageJ and ImageJ2 applications 2. Image Analysis Principles Must-read guidelines for effective acquisition and analysis of images 3. Living Workshops Workshops for ImageJ/Fiji at introductory, intermediate and advanced levels 4. Scripting Become a power user by writing scripts! Tutorials for image processing techniquesThe Scientific Imaging Tutorials introduce common elements of image processing.
Tutorials provided by microscopy facilitiesMany valuable resources for science are provided by facilities which collect,retain and maintain knowledge that might otherwise be lost. Here is a list oflinks to facilities providing tutorials and documentation:
BioDIP teaching materials Centre for Molecular and Cellular Imaging at the EMBLPlease feel welcome to add your organization鈥檚 tutorials to this list!
Tutorials for software developers and scriptersStart with the ImageJ2 tutorial notebooks!
And be sure to read over the Development pages.
Tutorials on this siteAnalyze FRAP movies with a Jython scriptHow to apply a common operation to a complete directoryHow to call a plugin with a range of parametersChessCorrecting drift in FRAP experimentsDownsampleEdit LUT As TextGabor Filter scriptGenerate and exploit KymographsThe Hue GameImageJ2 Python ScriptsLinux command line tutorialMamedMultithreaded Image Processing in ClojureMultithreaded Image Processing in JavaScriptJupyter NotebooksOpen an imageA Tutorial for using OpenCL in ImageJPlasma CloudRGB to CMYKSegmentation evaluation after border thinning - ScriptSegmentation evaluation metrics - ScriptImage Processing School Pilsen 2009 - SegmentationStitch and Align a sequence of grid images TutorialSuper Sloppy Surface ReconstructionTo add your tutorial to this list, place the page in the /tutorials folder.
See also Presentations about ImageJ and friends Fiji YouTube channel ImageJ videos and Fiji videos on YouTube Lecture BioImage Analysis 2020 videos on YouTube by Robert Haase